analysis API#

Analysis procedures for Hydroroot.

Define a set of methods to ease the analysis and simulation.

openalea.hydroroot.analysis.intercept(g, dists, dl=0.0001, max_order=None)[source]#

Compute intercepts (the number of segments intercepted) at given lengths from the base given as list of float

See also

Parameters:

g – (MTG)
dists – (list of Float) list of distances in m
dl – (float) - length in m of MTG segments (Default value = 1e-4)
max_order – (int) - maximum order of considering roots (Default value = None)

Returns:

intercepts: list of number of segments intercepted according to distances in dists

openalea.hydroroot.analysis.nb_roots(g, l, root=1, dl=0.0001, max_order=None)[source]#

Compute the number of segments intercepted at a given length from the base.

Parameters:

g – (MTG)
l – (length) - the length in m at which to count the intercepts
root – (int) - the root vertex from which the tree traversal start (Default value = 1)
dl – (float) - length in m of MTG segments (Default value = 1e-4)
max_order – (int) - maximum order of considering roots (Default value = None)

Returns: